PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0610s0015.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 250aa    MW: 29035.4 Da    PI: 8.6479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0610s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604e-1932118799
                          .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                          + ++++s+ l++pkkfa ++ +k   + t++l+ ++g  W+vk+   k+ + ++l+kGW +Fv ++ L+e D +vF+++g+s+f   v++
  Kalax.0610s0015.1.p  32 QIMANSSSELRVPKKFAMKFPMK--LGETIKLRGPTGDIWRVKV--VKTEEDVLLRKGWPQFVYDHLLNEYDLLVFRYTGSSSF--DVSI 115
                          455778888********999877..7779***************..**********************************9999..9999 PP

                          E-S CS
                   B3  97 frk 99 
                          f++
  Kalax.0610s0015.1.p 116 FDR 118
                          998 PP

2B353.15.9e-17138226198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv+  +  ++s+ l +pkk   ++g +++ + t++l+ +sg +W+v    +  ++ ++l+ GW +Fv+++ L+e Df++F+++g+s+f
  Kalax.0610s0015.1.p 138 FFKVM--NQEFRSK-LLIPKKL--RIGFVEKMGNTIRLKGPSGYVWKVGA--ETAGEDVILGIGWTQFVSDHTLDESDFLIFHYTGDSSF 220
                          78888..7777776.999***8..5777777888****************..9*********************************9999 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v +f+
  Kalax.0610s0015.1.p 221 --SVLIFD 226
                          ..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-2522121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-2423121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.9326119IPR003340B3 DNA binding domain
CDDcd100177.48E-1828117No hitNo description
SMARTSM010192.8E-1530119IPR003340B3 DNA binding domain
PfamPF023623.8E-1632119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.7E-20134228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-22135233IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.83135228IPR003340B3 DNA binding domain
CDDcd100178.69E-14136226No hitNo description
PfamPF023624.4E-14138226IPR003340B3 DNA binding domain
SMARTSM010192.2E-8138228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEMDEREET SRAMKEQIYW NQFESTKHHF FQIMANSSSE LRVPKKFAMK FPMKLGETIK  60
LRGPTGDIWR VKVVKTEEDV LLRKGWPQFV YDHLLNEYDL LVFRYTGSSS FDVSIFDRNA  120
CVKDLRMLQD RFESKPHFFK VMNQEFRSKL LIPKKLRIGF VEKMGNTIRL KGPSGYVWKV  180
GAETAGEDVI LGIGWTQFVS DHTLDESDFL IFHYTGDSSF SVLIFDLSRC EKESSHFVKL  240
AARSTDLRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein